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planemo upload commit 93217f9e3a1bc1afc8ce971176e4ae0169a8f265
author sargentl
date Wed, 28 Nov 2018 14:20:39 -0500
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1 A Galaxy Wrapper for regtools 1 A Galaxy Wrapper for regtools
2 ============================= 2 =============================
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4 This is a modified Galaxy wrapper for regtools which is based on the previous wrapper written by Remi Marenco (https://github.com/remimarenco/regtools). "regtools is a set of tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context" (https://regtools.readthedocs.io/en/latest/). 4 This is a modified Galaxy wrapper for regtools which is based on the previous wrapper written by Remi Marenco (https://github.com/remimarenco/regtools). "regtools is a set of tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context" (https://regtools.readthedocs.io/en/latest/).
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6 This wrapper adds an validation step to check if the output files are valid BED format. The lines with invalid strand (neighter "+" or "-") will be removed. 6 This wrapper adds an validation step to check if the output files are valid BED format. The lines with invalid strand (neither "+" or "-") will be removed.
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8 This wrapper creates a new 13th column to store the scores. The scores in column 4 will be changed to 1000. 8 This wrapper creates a new 13th column to store the scores. The scores in column 4 will be changed to 1000.
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10 The output is BED 12+1. 10 The output is BED 12+1.