A Galaxy Wrapper for regtools
=============================

This is a modified Galaxy wrapper for regtools which is based on the previous wrapper written by Remi Marenco (https://github.com/remimarenco/regtools). "regtools is a set of tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context" (https://regtools.readthedocs.io/en/latest/).

This wrapper adds an validation step to check if the output files are valid BED format. The lines with invalid strand (neither "+" or "-") will be removed. 

This wrapper creates a new 13th column to store the scores. The scores in column 4 will be changed to 1000. 

The output is BED 12+1.