Mercurial > repos > yating-l > regtools_junctions_extract

comparison tool_dependencies.xml @ 1:06d9062f5430 draft default tip

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planemo upload commit 93217f9e3a1bc1afc8ce971176e4ae0169a8f265
author sargentl
date Wed, 28 Nov 2018 14:20:39 -0500
parents 01ed8e112f2a
children
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0:01ed8e112f2a 1:06d9062f5430
1 <?xml version="1.0"?> 1 <?xml version="1.0" ?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="regtools" version="0.3.0"> 3 <package name="regtools" version="0.5.0">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="shell_command">git clone --recursive https://github.com/griffithlab/regtools.git</action> 6 <action type="shell_command">git clone http://github.com/griffithlab/regtools --recursive -b 0.5.0</action>
7 <action type="make_directory">build</action> 7 <action type="make_directory">build</action>
8 <action type="change_directory">build</action> 8 <action type="change_directory">build</action>
9
10 <action type="set_environment_for_install"> 9 <action type="set_environment_for_install">
11 <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> 10 <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
12 <package name="cmake" version="3.2.3" /> 11 <package name="cmake" version="3.2.3"/>
13 </repository> 12 </repository>
14 </action> 13 </action>
15 <action type="shell_command">cmake ..</action> 14 <action type="shell_command">cmake ..</action>
16
17 <action type="shell_command">make</action> 15 <action type="shell_command">make</action>
18 <action type="move_file"> 16 <action type="move_file">
19 <source>regtools</source> 17 <source>regtools</source>
20 <destination>$INSTALL_DIR</destination> 18 <destination>$INSTALL_DIR</destination>
21 </action> 19 </action>