Mercurial > repos > yating-l > regtools_junctions_extract
diff README.rst @ 0:01ed8e112f2a draft
planemo upload commit 6bf6d4ec8ff2ec6bd45b5f483ff2f83b6229d57d
author | yating-l |
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date | Wed, 12 Apr 2017 17:44:58 -0400 |
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children | 06d9062f5430 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.rst Wed Apr 12 17:44:58 2017 -0400 @@ -0,0 +1,10 @@ +A Galaxy Wrapper for regtools +============================= + +This is a modified Galaxy wrapper for regtools which is based on the previous wrapper written by Remi Marenco (https://github.com/remimarenco/regtools). "regtools is a set of tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context" (https://regtools.readthedocs.io/en/latest/). + +This wrapper adds an validation step to check if the output files are valid BED format. The lines with invalid strand (neighter "+" or "-") will be removed. + +This wrapper creates a new 13th column to store the scores. The scores in column 4 will be changed to 1000. + +The output is BED 12+1.