Mercurial > repos > yating-l > regtools_junctions_extract
diff tool_dependencies.xml @ 0:01ed8e112f2a draft
planemo upload commit 6bf6d4ec8ff2ec6bd45b5f483ff2f83b6229d57d
author | yating-l |
---|---|
date | Wed, 12 Apr 2017 17:44:58 -0400 |
parents | |
children | 06d9062f5430 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Wed Apr 12 17:44:58 2017 -0400 @@ -0,0 +1,28 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="regtools" version="0.3.0"> + <install version="1.0"> + <actions> + <action type="shell_command">git clone --recursive https://github.com/griffithlab/regtools.git</action> + <action type="make_directory">build</action> + <action type="change_directory">build</action> + + <action type="set_environment_for_install"> + <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="cmake" version="3.2.3" /> + </repository> + </action> + <action type="shell_command">cmake ..</action> + + <action type="shell_command">make</action> + <action type="move_file"> + <source>regtools</source> + <destination>$INSTALL_DIR</destination> + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> + </action> + </actions> + </install> + </package> +</tool_dependency>