diff tool_dependencies.xml @ 0:01ed8e112f2a draft

planemo upload commit 6bf6d4ec8ff2ec6bd45b5f483ff2f83b6229d57d
author yating-l
date Wed, 12 Apr 2017 17:44:58 -0400
parents
children 06d9062f5430
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Apr 12 17:44:58 2017 -0400
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+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="regtools" version="0.3.0">
+        <install version="1.0">
+            <actions>
+                <action type="shell_command">git clone --recursive https://github.com/griffithlab/regtools.git</action>
+                <action type="make_directory">build</action>
+                <action type="change_directory">build</action>
+
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="1aea698a1c63" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="cmake" version="3.2.3" />
+                    </repository>
+                </action>
+                <action type="shell_command">cmake ..</action>
+
+                <action type="shell_command">make</action>
+                <action type="move_file">
+                    <source>regtools</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+    </package>
+</tool_dependency>