changeset 9:a9d863528f48 draft

planemo upload commit 3ca568027e928fda034876935132a6dddaf1943f
author yating-l
date Tue, 10 Jul 2018 13:04:09 -0400
parents 7532cec01999
children c449963debd5
files blat.xml tool_dependencies.xml
diffstat 2 files changed, 3 insertions(+), 17 deletions(-) [+]
line wrap: on
line diff
--- a/blat.xml	Mon Jul 09 17:53:40 2018 -0400
+++ b/blat.xml	Tue Jul 10 13:04:09 2018 -0400
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="ucsc_blat" name="UCSC BLAT Alignment Tool" version="1.1">
+<tool id="ucsc_blat" name="UCSC BLAT Alignment Tool" version="1.2">
     <description>Standalone blat sequence search command line tool</description>
     <requirements>
       <requirement type="package" version="1.0">ucsc_tools_340_for_BLAT</requirement>
--- a/tool_dependencies.xml	Mon Jul 09 17:53:40 2018 -0400
+++ b/tool_dependencies.xml	Tue Jul 10 13:04:09 2018 -0400
@@ -8,20 +8,6 @@
         - pslCDnaFilter
     -->
     <package name="ucsc_tools_340_for_BLAT" version="1.0">
-        <install version="1.0">
-            <actions_group>
-                <actions architecture="x86_64" os="linux">
-                    <action type="download_by_url">http://old-gep.wustl.edu/~galaxy/package_ucsc_tools_340_for_BLAT.tar.gz</action>
-                    <action type="move_directory_files">
-                        <source_directory>.</source_directory>
-                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
-                    </action>
-                </actions>
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions_group>
-        </install>
-        <readme>The tools and utilities were created by the UCSC Genome Bioinformatics Group</readme>
+        <repository changeset_revision="b57fd6b3736c" name="package_ucsc_blat_340" owner="yating-l" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
-</tool_dependency>
\ No newline at end of file
+</tool_dependency>