Mercurial > repos > yhoogstrate > crossmap
annotate README.rst @ 3:0e0294f5ab3a draft
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 6e66f1e17650f888c84ec82d100195db61dffdc7-dirty
author | yhoogstrate |
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date | Thu, 08 Oct 2015 04:54:07 -0400 |
parents | bfcdabc062ca |
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bfcdabc062ca
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb
yhoogstrate
parents:
diff
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1 CrossMap wrapper for Galaxy |
bfcdabc062ca
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb
yhoogstrate
parents:
diff
changeset
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2 =========================== |
bfcdabc062ca
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb
yhoogstrate
parents:
diff
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3 |
bfcdabc062ca
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb
yhoogstrate
parents:
diff
changeset
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4 CrossMap is versatile tool to convert genome coordinates or annotation files between genome |
bfcdabc062ca
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb
yhoogstrate
parents:
diff
changeset
|
5 assemblies. It supports mostly commonly used file types, including BAM, BED,BigWig, GFF, |
bfcdabc062ca
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb
yhoogstrate
parents:
diff
changeset
|
6 GTF, SAM, Wiggle, and VCF formats. For large plain text file types, such as BED, GFF, GTF |
bfcdabc062ca
planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb
yhoogstrate
parents:
diff
changeset
|
7 and VCF, reading from remote servers and file compression are supported. |