Mercurial > repos > yhoogstrate > crossmap

annotate test-data/test_vcf_01_input.vcf @ 0:bfcdabc062ca draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb
author yhoogstrate
date Wed, 26 Aug 2015 11:04:47 -0400
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bfcdabc062ca planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb
yhoogstrate
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diff changeset
1 ##fileformat=VCFv4.2
bfcdabc062ca planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb
yhoogstrate
parents:
diff changeset
2 ##FORMAT=<ID=GT,Number=1,Type=Integer,Description="Genotype">
bfcdabc062ca planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb
yhoogstrate
parents:
diff changeset
3 ##FORMAT=<ID=GP,Number=G,Type=Float,Description="Genotype Probabilities">
bfcdabc062ca planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb
yhoogstrate
parents:
diff changeset
4 ##FORMAT=<ID=PL,Number=G,Type=Float,Description="Phred-scaled Genotype Likelihoods">
bfcdabc062ca planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb
yhoogstrate
parents:
diff changeset
5 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMP001 SAMP002
bfcdabc062ca planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb
yhoogstrate
parents:
diff changeset
6 1 10 rs11449 G A . PASS . GT 0/0 0/1
bfcdabc062ca planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb
yhoogstrate
parents:
diff changeset
7 1 100 rs84825 C C . PASS . GT:GP 0/1:. 0/1:0.03,0.97,0
bfcdabc062ca planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit d4e9fe61901a612c78d9f26f172537b27fd2ddbb
yhoogstrate
parents:
diff changeset
8 1 200 rs84823 T G . PASS . GT:PL ./.:. 1/1:10,5,0