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view test-data/test_vcf_01_output.vcf @ 7:1efce8a693ca draft default tip

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper commit 2a0f8a26551929e52f6aea1d109b8a3bda81af8b-dirty
author yhoogstrate
date Thu, 12 Nov 2015 16:08:56 -0500
parents bfcdabc062ca
children
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##fileformat=VCFv4.2
##FORMAT=<ID=GT,Number=1,Type=Integer,Description="Genotype">
##FORMAT=<ID=GP,Number=G,Type=Float,Description="Genotype Probabilities">
##FORMAT=<ID=PL,Number=G,Type=Float,Description="Phred-scaled Genotype Likelihoods">
##liftOverProgram=CrossMap(https://sourceforge.net/projects/crossmap/)
##liftOverFile=test_vcf_01.over.chain
##new_reference_genome=test_vcf_01.fasta
##liftOverTime=August13,2015
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	SAMP001	SAMP002
2	227	rs11449	C	A	.	PASS	.	GT	0/0	0/1
2	137	rs84825	T	C	.	PASS	.	GT:GP	0/1:.	0/1:0.03,0.97,0
2	36	rs84823	C	G	.	PASS	.	GT:PL	./.:.	1/1:10,5,0