Mercurial > repos > yhoogstrate > edger_with_design_matrix

comparison edgeR_Convert_DGE_Table_to_Bedgraph.xml @ 8:31a23ae7c61e draft default tip

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/edger_with_design_matrix commit eb5cd7834861d8ddbffce974ed0ca6f1c0ecccf2
author erasmus-medical-center
date Tue, 14 Feb 2017 10:01:51 -0500
parents ec951a5017f8
children
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7:55f4e42f91ba 8:31a23ae7c61e
1 <?xml version="1.0" encoding="UTF-8"?> 1 <?xml version="1.0" encoding="UTF-8"?>
2 <tool id="edger_dge_table_to_bedgraph" name="edgeR: Convert 'differentially expressed genes'-table to bedgraph(s)" version="1.0.0.b"> 2 <tool id="edger_dge_table_to_bedgraph" name="edgeR: Convert 'differentially expressed genes'-table to bedgraph(s)" version="1.0.0.c">
3 <description>EdgeR's "differentially expressed genes" table to bedgraph(s)</description> 3 <description>EdgeR's "differentially expressed genes" table to bedgraph(s)</description>
4 4
5 <macros> 5 <macros>
6 <import>edgeR_macros.xml</import> 6 <import>edgeR_macros.xml</import>
7 </macros> 7 </macros>
8 8
9 <requirements> 9 <requirements>
10 <requirement type="package" version="1.0.0">edger_dge_table_to_bedgraph</requirement> 10 <requirement type="package" version="2.7">python</requirement>
11 </requirements> 11 </requirements>
12 12
13 <command> 13 <command>
14 edger_dge_table_to_bedgraph 14 python '${__tool_directory__}/bin/edger_dge_table_to_bedgraph'
15 -t $cpm_table 15 -t $cpm_table
16 -g $geneset 16 -g $geneset
17 17
18 #if $logfc: 18 #if $logfc:
19 -c3 $logfc 19 -c3 $logfc