Mercurial > repos > yhoogstrate > featurecounts

comparison tool_dependencies.xml @ 2:b5c93611d2c5 draft

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planemo upload for repository https://github.com/ErasmusMC-Bioinformatics/featurecounts_galaxy_wrapper commit b05640a41e2106782ac7f88f858b0a256918fa6f
author yhoogstrate
date Thu, 10 Sep 2015 05:11:49 -0400
parents 63bd455ed299
children e04fbcc4e91a
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1:63bd455ed299 2:b5c93611d2c5
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="featurecounts" version="1.4.6.p1"> 3 <package name="featurecounts" version="1.4.6.p1">
4 <repository changeset_revision="a4c247fdd71b" name="package_featurecounts_1_4_6" owner="yhoogstrate" toolshed="https://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="42796f06052f" name="package_featurecounts_1_4_6" owner="yhoogstrate" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 6
7 <package name="featurecounts2bed" version="1.0.0"> 7 <package name="featurecounts2bed" version="1.0.0">
8 <install version="1.0"> 8 <install version="1.0">
9 <actions> 9 <actions>
10 <action type="shell_command">mkdir $INSTALL_DIR/bin ; cp $REPOSITORY_INSTALL_DIR/featurecounts2bed.sh $INSTALL_DIR/bin/</action> 10 <action type="shell_command">
11 <action type="chmod"> 11 mkdir $INSTALL_DIR/bin &amp;&amp;
12 <file mode="755">$INSTALL_DIR/bin/featurecounts2bed.sh</file> 12 cp $REPOSITORY_INSTALL_DIR/featurecounts2bed.sh $INSTALL_DIR/bin/
13 </action> 13 </action>
14 <action type="set_environment"> 14 <action type="chmod">
15 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 15 <file mode="755">$INSTALL_DIR/bin/featurecounts2bed.sh</file>
16 <environment_variable action="prepend_to" name="PATH">$REPOSITORY_INSTALL_DIR</environment_variable> 16 </action>
17 </action> 17 <action type="set_environment">
18 </actions> 18 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
19 </install> 19 <environment_variable action="prepend_to" name="PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
20 </package> 20 </action>
21 </actions>
22 </install>
23 </package>
21 </tool_dependency> 24 </tool_dependency>