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comparison flaimapper-gtf-from-fasta.xml @ 1:96d135d3c57f draft

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planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/flaimapper commit 18c2fff1b59feb43640d744444d8fb6193def183-dirty
author yhoogstrate
date Wed, 03 Jun 2015 07:57:12 -0400
parents d6abffbc9ee7
children 8faba9df2791
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0:d6abffbc9ee7 1:96d135d3c57f
1 <?xml version="1.0" encoding="UTF-8"?> 1 <?xml version="1.0" encoding="UTF-8"?>
2 <tool id="flaimapper-gtf-from-fasta" name="FlaiMapper: extract GTF from FASTA" version="1.1.5.b"> 2 <tool id="flaimapper-gtf-from-fasta" name="FlaiMapper: extract GTF from FASTA" version="1.2.1.w1">
3 <description>Extract GTF file from FASTA file (as FlaiMapper reference).</description> 3 <description>Extract GTF file from FASTA file (as FlaiMapper reference).</description>
4 <requirements> 4 <requirements>
5 <requirement type="package" version="0.8.2.1">pysam</requirement> 5 <requirement type="package" version="1.2.1">flaimapper</requirement>
6 <requirement type="package" version="1.1.5">flaimapper</requirement>
7 </requirements> 6 </requirements>
8 7
9 <stdio> 8 <stdio>
10 <regex 9 <regex
11 match="[fai_load] build FASTA index." 10 match="[fai_load] build FASTA index."
30 <data format="gtf" name="output" label="${tool.name} on ${fasta.name}" /> 29 <data format="gtf" name="output" label="${tool.name} on ${fasta.name}" />
31 </outputs> 30 </outputs>
32 31
33 <tests> 32 <tests>
34 <test> 33 <test>
35 <param name="fasta" value="ncrnadb09.fa" ftype="fasta" /> 34 <param name="fasta" value="test3/ncrnadb09.fa" ftype="fasta" />
36 35
37 <output name="output" file="ncrnadb09.gtf" /> 36 <output name="output" file="test3/reference.gtf" />
38 </test> 37 </test>
39 </tests> 38 </tests>
40 39
41 <help> 40 <help>
42 FlaiMapper wrapper for Galaxy 41 FlaiMapper wrapper for Galaxy