Mercurial > repos > yhoogstrate > flaimapper

comparison tool_dependencies.xml @ 1:96d135d3c57f draft

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planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/flaimapper commit 18c2fff1b59feb43640d744444d8fb6193def183-dirty
author yhoogstrate
date Wed, 03 Jun 2015 07:57:12 -0400
parents d6abffbc9ee7
children affc5ec4f65a
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0:d6abffbc9ee7 1:96d135d3c57f
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="pysam" version="0.8.2.1"> 3 <package name="flaimapper" version="1.2.1">
4 <repository changeset_revision="b8d22acd3017" name="package_pysam_0_8_2" owner="yhoogstrate" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="88696b8f774b" name="package_flaimapper_1_2_1" owner="yhoogstrate" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6
7 <package name="flaimapper" version="1.1.5">
8 <install version="1.0">
9 <actions>
10
11 <action type="set_environment_for_install">
12 <repository changeset_revision="b8d22acd3017" name="package_pysam_0_8_2" owner="yhoogstrate" toolshed="https://toolshed.g2.bx.psu.edu">
13 <package name="pysam" version="0.8.2.1" />
14 </repository>
15 </action>
16
17 <action type="make_directory">$INSTALL_DIR</action>
18 <action type="make_directory">$INSTALL_DIR/bin</action>
19
20 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR:$INSTALL_DIR"/lib/python":$INSTALL_DIR"/lib64/python":$PYSAM_PATH:$PYSAM_PATH"/lib/python":$PYSAM_PATH"/lib64/python" ; easy_install --prefix=$INSTALL_DIR --install-dir=$INSTALL_DIR --script-dir=$INSTALL_DIR/bin $REPOSITORY_INSTALL_DIR"/egg/flaimapper-1.1.5-py2.7.egg"</action>
21
22 <action type="set_environment">
23 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
25 </action>
26 </actions>
27 </install>
28
29 <readme>
30 Because I accidentally included too much large files within the
31 GitHub repository of FlaiMapper it is not convenient to use git
32 to pull the latest code from. Downloading simply takes way to
33 long and the package size is unnecessairy large.
34
35 Instead, I have created an egg that can be installed using
36 easy_install.
37 </readme>
38 </package> 5 </package>
39 </tool_dependency> 6 </tool_dependency>