Mercurial > repos > yhoogstrate > flaimapper
diff tool_dependencies.xml @ 1:96d135d3c57f draft
planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/flaimapper commit 18c2fff1b59feb43640d744444d8fb6193def183-dirty
| author | yhoogstrate |
|---|---|
| date | Wed, 03 Jun 2015 07:57:12 -0400 |
| parents | d6abffbc9ee7 |
| children | affc5ec4f65a |
line wrap: on
line diff
--- a/tool_dependencies.xml Thu May 21 07:26:46 2015 -0400 +++ b/tool_dependencies.xml Wed Jun 03 07:57:12 2015 -0400 @@ -1,39 +1,6 @@ <?xml version="1.0"?> <tool_dependency> - <package name="pysam" version="0.8.2.1"> - <repository changeset_revision="b8d22acd3017" name="package_pysam_0_8_2" owner="yhoogstrate" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> - - <package name="flaimapper" version="1.1.5"> - <install version="1.0"> - <actions> - - <action type="set_environment_for_install"> - <repository changeset_revision="b8d22acd3017" name="package_pysam_0_8_2" owner="yhoogstrate" toolshed="https://toolshed.g2.bx.psu.edu"> - <package name="pysam" version="0.8.2.1" /> - </repository> - </action> - - <action type="make_directory">$INSTALL_DIR</action> - <action type="make_directory">$INSTALL_DIR/bin</action> - - <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR:$INSTALL_DIR"/lib/python":$INSTALL_DIR"/lib64/python":$PYSAM_PATH:$PYSAM_PATH"/lib/python":$PYSAM_PATH"/lib64/python" ; easy_install --prefix=$INSTALL_DIR --install-dir=$INSTALL_DIR --script-dir=$INSTALL_DIR/bin $REPOSITORY_INSTALL_DIR"/egg/flaimapper-1.1.5-py2.7.egg"</action> - - <action type="set_environment"> - <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> - </action> - </actions> - </install> - - <readme> - Because I accidentally included too much large files within the - GitHub repository of FlaiMapper it is not convenient to use git - to pull the latest code from. Downloading simply takes way to - long and the package size is unnecessairy large. - - Instead, I have created an egg that can be installed using - easy_install. - </readme> + <package name="flaimapper" version="1.2.1"> + <repository changeset_revision="88696b8f774b" name="package_flaimapper_1_2_1" owner="yhoogstrate" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency>