diff tool_dependencies.xml @ 1:96d135d3c57f draft

planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/flaimapper commit 18c2fff1b59feb43640d744444d8fb6193def183-dirty
author yhoogstrate
date Wed, 03 Jun 2015 07:57:12 -0400
parents d6abffbc9ee7
children affc5ec4f65a
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu May 21 07:26:46 2015 -0400
+++ b/tool_dependencies.xml	Wed Jun 03 07:57:12 2015 -0400
@@ -1,39 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-	<package name="pysam" version="0.8.2.1">
-		<repository changeset_revision="b8d22acd3017" name="package_pysam_0_8_2" owner="yhoogstrate" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
-	</package>
-	
-	<package name="flaimapper" version="1.1.5">
-		<install version="1.0">
-			<actions>
-				
-				<action type="set_environment_for_install">
-					<repository changeset_revision="b8d22acd3017" name="package_pysam_0_8_2" owner="yhoogstrate" toolshed="https://toolshed.g2.bx.psu.edu">
-						<package name="pysam" version="0.8.2.1" />
-					</repository>
-				</action>
-				
-				<action type="make_directory">$INSTALL_DIR</action>
-				<action type="make_directory">$INSTALL_DIR/bin</action>
-				
-				<action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR:$INSTALL_DIR"/lib/python":$INSTALL_DIR"/lib64/python":$PYSAM_PATH:$PYSAM_PATH"/lib/python":$PYSAM_PATH"/lib64/python" ; easy_install --prefix=$INSTALL_DIR --install-dir=$INSTALL_DIR --script-dir=$INSTALL_DIR/bin $REPOSITORY_INSTALL_DIR"/egg/flaimapper-1.1.5-py2.7.egg"</action>
-				
-				<action type="set_environment">
-					<environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
-					<environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
-				</action>
-			</actions>
-		</install>
-		
-		<readme>
-			Because I accidentally included too much large files within the
-			GitHub repository of FlaiMapper it is not convenient to use git
-			to pull the latest code from. Downloading simply takes way to
-			long and the package size is unnecessairy large.
-			
-			Instead, I have created an egg that can be installed using
-			easy_install.
-		</readme>
+	<package name="flaimapper" version="1.2.1">
+		<repository changeset_revision="88696b8f774b" name="package_flaimapper_1_2_1" owner="yhoogstrate" toolshed="https://toolshed.g2.bx.psu.edu" />
 	</package>
 </tool_dependency>