Mercurial > repos > yhoogstrate > flaimapper

comparison tool_dependencies.xml @ 0:d6abffbc9ee7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/flaimapper commit 0f4aa594becc89b07073f7fcccd889e38974e10c-dirty
author yhoogstrate
date Thu, 21 May 2015 07:26:46 -0400
parents
children 96d135d3c57f
comparison
equal deleted inserted replaced
-1:000000000000 0:d6abffbc9ee7
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="pysam" version="0.8.2.1">
4 <repository changeset_revision="b8d22acd3017" name="package_pysam_0_8_2" owner="yhoogstrate" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6
7 <package name="flaimapper" version="1.1.5">
8 <install version="1.0">
9 <actions>
10
11 <action type="set_environment_for_install">
12 <repository changeset_revision="b8d22acd3017" name="package_pysam_0_8_2" owner="yhoogstrate" toolshed="https://toolshed.g2.bx.psu.edu">
13 <package name="pysam" version="0.8.2.1" />
14 </repository>
15 </action>
16
17 <action type="make_directory">$INSTALL_DIR</action>
18 <action type="make_directory">$INSTALL_DIR/bin</action>
19
20 <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR:$INSTALL_DIR"/lib/python":$INSTALL_DIR"/lib64/python":$PYSAM_PATH:$PYSAM_PATH"/lib/python":$PYSAM_PATH"/lib64/python" ; easy_install --prefix=$INSTALL_DIR --install-dir=$INSTALL_DIR --script-dir=$INSTALL_DIR/bin $REPOSITORY_INSTALL_DIR"/egg/flaimapper-1.1.5-py2.7.egg"</action>
21
22 <action type="set_environment">
23 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
24 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
25 </action>
26 </actions>
27 </install>
28
29 <readme>
30 Because I accidentally included too much large files within the
31 GitHub repository of FlaiMapper it is not convenient to use git
32 to pull the latest code from. Downloading simply takes way to
33 long and the package size is unnecessairy large.
34
35 Instead, I have created an egg that can be installed using
36 easy_install.
37 </readme>
38 </package>
39 </tool_dependency>