Mercurial > repos > yhoogstrate > package_featurecounts_1_4_6

comparison tool_dependencies.xml @ 0:a4c247fdd71b draft

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planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_featurecounts_1_4_6 commit 0eac9a776e7bc33275b8ef5e76a4f17b7b5c1259-dirty
author yhoogstrate
date Mon, 01 Jun 2015 07:17:56 -0400
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children 42796f06052f
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-1:000000000000 0:a4c247fdd71b
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="featurecounts" version="1.4.6.p1">
4 <install version="1.0">
5 <actions>
6 <action type="shell_command">
7 wget http://garr.dl.sourceforge.net/project/subread/subread-1.4.6-p1/subread-1.4.6-p1-source.tar.gz &amp;&amp;
8 tar -zxvf subread-1.4.6-p1-source.tar.gz &amp;&amp;
9 cd subread-1.4.6-p1-source/src/ &amp;&amp;
10 make -f Makefile.Linux &amp;&amp;
11 cd ../../
12 </action>
13 <action type="move_file">
14 <source>../subread-1.4.6-p1-source/bin/featureCounts</source>
15 <destination>$INSTALL_DIR/bin/</destination>
16 </action>
17 <action type="set_environment">
18 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
19 <!--<environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR</environment_variable>-->
20 </action>
21 </actions>
22 </install>
23 <readme>
24 Downloads and installs featureCounts.
25
26 Prerequisites:
27 - wget
28 - gnu-autotools (make)
29 - tar
30 </readme>
31 </package>
32 </tool_dependency>