Mercurial > repos > yhoogstrate > package_fuma_2_7_1

annotate tool_dependencies.xml @ 0:d728db4c0214 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
author yhoogstrate
date Mon, 01 Jun 2015 06:44:55 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
1 <?xml version="1.0"?>
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
2 <tool_dependency>
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
3 <package name="htseq" version="0.6.1">
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
4 <repository changeset_revision="5b3da3e3543d" name="package_htseq_0_6" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
5 </package>
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
6
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
7 <package name="fuma" version="2.7.1">
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
8 <install version="1.0">
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
9 <actions>
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
10 <action type="set_environment_for_install">
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
11 <repository changeset_revision="5b3da3e3543d" name="package_htseq_0_6" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
12 <package name="htseq" version="0.6.1" />
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
13 </repository>
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
14 </action>
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
15
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
16 <action type="make_directory">$INSTALL_DIR/lib/python</action>
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
17 <action type="make_directory">$INSTALL_DIR/lib64/python</action>
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
18
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
19 <action type="shell_command">
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
20 git clone https://github.com/yhoogstrate/fuma.git fuma &amp;&amp;
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
21 cd fuma &amp;&amp;
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
22 git reset --hard 3d9a0532209d4ad10283cac324788b4fecfd2675 &amp;&amp;
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
23
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
24 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python &amp;&amp;
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
25 python setup.py build &amp;&amp;
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
26 python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
27 </action>
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
28
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
29 <action type="set_environment">
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
30 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python:$INSTALL_DIR/lib64/python</environment_variable>
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
31 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
32 </action>
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
33 </actions>
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
34 </install>
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
35 <readme>
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
36 Downloads and installs FuMa. Prerequisites:
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
37 - git
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
38 </readme>
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
39 </package>
d728db4c0214 planemo upload for repository https://bitbucket.org/EMCbioinf/galaxy-tool-shed-tools/raw/master/package_fuma_2_7_1 commit a88597518f3715c0b22283f6f31757205efcb8d0-dirty
yhoogstrate
parents:
diff changeset
40 </tool_dependency>