annotate jvarkit/vcffilterjs.xml @ 2:eb9aeaee2e13 draft

Uploaded
author yokofakun
date Wed, 25 Feb 2015 09:09:57 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
1 <?xml version="1.0"?>
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
2 <tool hidden="false" id="com.github.lindenb.jvarkit.tools.vcffilterjs.VCFFilterJS" version="ffd9de89f479bfb81a94c9a92655a14b81d95976" name="vcffilterjs"><requirements><requirement type="binary">java</requirement></requirements>java -cp commons-jexl-2.1.1.jar:commons-logging-1.1.1.jar:htsjdk-1.129.jar:snappy-java-1.0.3-rc3.jar:vcffilterjs.jar com.github.lindenb.jvarkit.tools.vcffilterjs.VCFFilterJS -e ${expression} -o ${output} ${input}<inputs>
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
3 <param format="vcf" name="input" type="data" label="VCF input"/>
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
4 <param name="expression" type="string"/>
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
5 </inputs><inputs>
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
6 <data format="vcf" name="output"/>
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
7 </inputs><stdio><exit_code range="1:"/><exit_code range=":-1"/></stdio><help>
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
8
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
9
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
10 **Inputs**
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
11
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
12
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
13
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
14 **Outputs**
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
15
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
16
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
17 **Citation**
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
18
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
19 If you use this Galaxy tool in work leading to a scientific publication please
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
20 cite: Pierre Lindenbaum PhD @yokofakun.
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
21
eb9aeaee2e13 Uploaded
yokofakun
parents:
diff changeset
22 </help></tool>