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0
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1 filename /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp2.res.txt
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2 is_pairEnd 0
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3 clipping_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.clipping_profile.png
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4 mapq_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.mapq_profile.png
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5 mapq_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp2.mapq_profile.xls
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6 read_cov_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.geneBodyCoverage.png
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7 trans_cov_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.TransCoverage.png
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8 insert_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.inner_distance_plot.png
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9 insert_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp2.inner_distance_freq.txt
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10 read_dist_plot_file1 /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.read_distr.png
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11 read_dist_plot_file2 /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.read_distr_pie.png
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12 readLen_plot_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/figs/smp2.readlen_profile.png
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13 geneCount_file /sonas-hs/bsr/hpc/data/yjin/test_BAMqc/exp/test1/data/smp2.geneAbundance.txt
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14 seqDeDup_percent 0.000000
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15 posDeDup_percent 0.000000
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16 no_clipping 0
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17 no_rRNA 0
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18 total_reads 80603
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19 uniq_mapped_reads 69389
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20 multi_mapped_reads 11214
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21 unmapped_reads 0
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22 low_qual 0
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23 low_qual_read1 0
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24 low_qual_read2 0
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25 pcr_dup 0
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26 rRNA_read 5939
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27 cds_read 22143
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28 utr5_read 1293
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29 utr3_read 15499
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30 intron_read 7798
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31 itgup1k_read 156
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32 itgdn1k_read 511
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33 itg_read 21398
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34 unmapped_read1 0
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35 unmapped_read2 0
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36 mapped_read1 0
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37 mapped_read2 0
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38 forward_read 34065
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39 reverse_read 35324
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40 paired_reads 0
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41 mapped_plus_minus 0
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42 mapped_plus_plus 0
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43 mapped_minus_plus 0
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44 mapped_minus_minus 0
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45 ins_read 0
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46 del_read 0
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47 noSplice 56765
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48 splice 12624
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49 paired_diff_chrom 0
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