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1 ##fileformat=VCFv4.2
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2 ##FILTER=<ID=PASS,Description="All filters passed">
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3 ##fileDate=20090805
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4 ##unused=<XX=AA,Description="Unused generic">
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5 ##source=myImputationProgramV3.1
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6 ##reference=file:///seq/references/1000GenomesPilot-NCBI36.fasta
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7 ##contig=<ID=20,length=62435964,assembly=B36,md5=f126cdf8a6e0c7f379d618ff66beb2da,species="Homo sapiens",taxonomy=x>
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8 ##phasing=partial
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9 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
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10 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
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11 ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency">
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12 ##INFO=<ID=AA,Number=1,Type=String,Description="Ancestral Allele">
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13 ##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP membership, build 129">
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14 ##INFO=<ID=H2,Number=0,Type=Flag,Description="HapMap2 membership">
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15 ##FILTER=<ID=q10,Description="Quality below 10">
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16 ##FILTER=<ID=s50,Description="Less than 50% of samples have data">
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17 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
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18 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
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19 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
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20 ##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality">
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21 ##FORMAT=<ID=TS,Number=1,Type=String,Description="Test String">
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22 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA00001 NA00002 NA00003
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23 20 14370 rs6054257 G A 29 PASS NS=3;DP=14;AF=0.5;DB;H2 GT:GQ:DP:HQ:TS 0|0:48:1:51,51:String1 1|0:48:8:51,51:SomeOtherString2 1/1:43:5:.,.:YetAnotherString3
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24 20 14370 . G A 29 PASS NS=3;DP=14;AF=0.5;DB;H2 GT:DP:HQ:TS 0|0:1:51,51:String1 1|0:8:51,51:SomeOtherString2 1/1:5:.,.:YetAnotherString3
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25 20 14370 . G A 29 PASS NS=3;DP=99;AF=0.5;DB;H2 GT:DP:HQ:TS 0|0:9:51,51:String1 1|0:9:51,51:SomeOtherString2 1/1:9:.,.:YetAnotherString3
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26 20 1110696 . A G,T 67 . NS=2;DP=10;AF=0.333,.;AA=T;DB GT 2 1 ./.
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27 20 1110696 . A G,T 67 . NS=2;DP=10;AF=0.333,.;AA=T;DB GT 2 1 ./.
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28 20 1110696 . G A 67 . NS=2;DP=99;AF=0.333,.;AA=T;DB GT:DP 2:9 1:9 ./.:9
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