Mercurial > repos > youngkim > ezbamqc
comparison ezBAMQC/src/htslib/config.mk.in @ 0:dfa3745e5fd8
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| author | youngkim |
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| date | Thu, 24 Mar 2016 17:12:52 -0400 |
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| -1:000000000000 | 0:dfa3745e5fd8 |
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| 1 # Optional configure Makefile overrides for htslib. | |
| 2 # | |
| 3 # Copyright (C) 2015 Genome Research Ltd. | |
| 4 # | |
| 5 # Author: John Marshall <jm18@sanger.ac.uk> | |
| 6 # | |
| 7 # Permission is hereby granted, free of charge, to any person obtaining a copy | |
| 8 # of this software and associated documentation files (the "Software"), to deal | |
| 9 # in the Software without restriction, including without limitation the rights | |
| 10 # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell | |
| 11 # copies of the Software, and to permit persons to whom the Software is | |
| 12 # furnished to do so, subject to the following conditions: | |
| 13 # | |
| 14 # The above copyright notice and this permission notice shall be included in | |
| 15 # all copies or substantial portions of the Software. | |
| 16 # | |
| 17 # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR | |
| 18 # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, | |
| 19 # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL | |
| 20 # THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER | |
| 21 # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING | |
| 22 # FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER | |
| 23 # DEALINGS IN THE SOFTWARE. | |
| 24 | |
| 25 # This is @configure_input@ | |
| 26 # | |
| 27 # If you use configure, this file overrides variables and augments rules | |
| 28 # in the Makefile to reflect your configuration choices. If you don't run | |
| 29 # configure, the main Makefile contains suitable conservative defaults. | |
| 30 | |
| 31 prefix = @prefix@ | |
| 32 exec_prefix = @exec_prefix@ | |
| 33 bindir = @bindir@ | |
| 34 includedir = @includedir@ | |
| 35 libdir = @libdir@ | |
| 36 datarootdir = @datarootdir@ | |
| 37 mandir = @mandir@ | |
| 38 | |
| 39 CC = @CC@ | |
| 40 RANLIB = @RANLIB@ | |
| 41 | |
| 42 CFLAGS = @CFLAGS@ | |
| 43 LDFLAGS = @LDFLAGS@ | |
| 44 LDLIBS = @LIBS@ | |
| 45 | |
| 46 | |
| 47 # ifeq/.../endif, +=, and target-specific variables are GNU Make-specific. | |
| 48 # If you don't have GNU Make, comment out this conditional and note that | |
| 49 # to enable iRODS you will need to implement the following elsewhere. | |
| 50 ifeq "iRODS-@irods@" "iRODS-enabled" | |
| 51 | |
| 52 @define_IRODS_HOME@ | |
| 53 | |
| 54 EXTRA_CPPFLAGS_IRODS = \ | |
| 55 -I$(IRODS_HOME)/lib/api/include \ | |
| 56 -I$(IRODS_HOME)/lib/core/include \ | |
| 57 -I$(IRODS_HOME)/lib/md5/include \ | |
| 58 -I$(IRODS_HOME)/lib/sha1/include \ | |
| 59 -I$(IRODS_HOME)/server/core/include \ | |
| 60 -I$(IRODS_HOME)/server/drivers/include \ | |
| 61 -I$(IRODS_HOME)/server/icat/include | |
| 62 | |
| 63 LDFLAGS += -L$(IRODS_HOME)/lib/core/obj | |
| 64 LDLIBS += -lRodsAPIs -lgssapi_krb5 | |
| 65 | |
| 66 LIBHTS_OBJS += hfile_irods.o | |
| 67 | |
| 68 hfile.o hfile.pico: CPPFLAGS += -DHAVE_IRODS | |
| 69 | |
| 70 hfile_irods.o hfile_irods.pico: CPPFLAGS += $(EXTRA_CPPFLAGS_IRODS) | |
| 71 | |
| 72 endif |