0
|
1 # Optional configure Makefile overrides for htslib.
|
|
2 #
|
|
3 # Copyright (C) 2015 Genome Research Ltd.
|
|
4 #
|
|
5 # Author: John Marshall <jm18@sanger.ac.uk>
|
|
6 #
|
|
7 # Permission is hereby granted, free of charge, to any person obtaining a copy
|
|
8 # of this software and associated documentation files (the "Software"), to deal
|
|
9 # in the Software without restriction, including without limitation the rights
|
|
10 # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
|
11 # copies of the Software, and to permit persons to whom the Software is
|
|
12 # furnished to do so, subject to the following conditions:
|
|
13 #
|
|
14 # The above copyright notice and this permission notice shall be included in
|
|
15 # all copies or substantial portions of the Software.
|
|
16 #
|
|
17 # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
|
18 # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
|
19 # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
|
|
20 # THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
|
|
21 # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
|
|
22 # FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
|
|
23 # DEALINGS IN THE SOFTWARE.
|
|
24
|
|
25 # This is @configure_input@
|
|
26 #
|
|
27 # If you use configure, this file overrides variables and augments rules
|
|
28 # in the Makefile to reflect your configuration choices. If you don't run
|
|
29 # configure, the main Makefile contains suitable conservative defaults.
|
|
30
|
|
31 prefix = @prefix@
|
|
32 exec_prefix = @exec_prefix@
|
|
33 bindir = @bindir@
|
|
34 includedir = @includedir@
|
|
35 libdir = @libdir@
|
|
36 datarootdir = @datarootdir@
|
|
37 mandir = @mandir@
|
|
38
|
|
39 CC = @CC@
|
|
40 RANLIB = @RANLIB@
|
|
41
|
|
42 CFLAGS = @CFLAGS@
|
|
43 LDFLAGS = @LDFLAGS@
|
|
44 LDLIBS = @LIBS@
|
|
45
|
|
46
|
|
47 # ifeq/.../endif, +=, and target-specific variables are GNU Make-specific.
|
|
48 # If you don't have GNU Make, comment out this conditional and note that
|
|
49 # to enable iRODS you will need to implement the following elsewhere.
|
|
50 ifeq "iRODS-@irods@" "iRODS-enabled"
|
|
51
|
|
52 @define_IRODS_HOME@
|
|
53
|
|
54 EXTRA_CPPFLAGS_IRODS = \
|
|
55 -I$(IRODS_HOME)/lib/api/include \
|
|
56 -I$(IRODS_HOME)/lib/core/include \
|
|
57 -I$(IRODS_HOME)/lib/md5/include \
|
|
58 -I$(IRODS_HOME)/lib/sha1/include \
|
|
59 -I$(IRODS_HOME)/server/core/include \
|
|
60 -I$(IRODS_HOME)/server/drivers/include \
|
|
61 -I$(IRODS_HOME)/server/icat/include
|
|
62
|
|
63 LDFLAGS += -L$(IRODS_HOME)/lib/core/obj
|
|
64 LDLIBS += -lRodsAPIs -lgssapi_krb5
|
|
65
|
|
66 LIBHTS_OBJS += hfile_irods.o
|
|
67
|
|
68 hfile.o hfile.pico: CPPFLAGS += -DHAVE_IRODS
|
|
69
|
|
70 hfile_irods.o hfile_irods.pico: CPPFLAGS += $(EXTRA_CPPFLAGS_IRODS)
|
|
71
|
|
72 endif
|