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view ezBAMQC/src/htslib/test/fieldarith.sam @ 14:744987262771
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author | cshl-bsr |
---|---|
date | Wed, 30 Mar 2016 12:15:03 -0400 |
parents | dfa3745e5fd8 |
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@SQ SN:one LN:1000 @SQ SN:two LN:500 @CO For each SAM record that has each listed aux field, performs these tests: @CO XQ is the expected result for bam_cigar2qlen() @CO XR is the expected result for bam_cigar2rlen() @CO XE is the expected result for bam_endpos() @CO (Note that these are all zero-based, while POS is one-based in SAM) r1 0 one 50 20 8M * 0 0 ATGCATGC qqqqqqqq XQ:i:8 XR:i:8 XE:i:57 r2 0 one 100 20 50M * 0 0 ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCAT qqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqqq XQ:i:50 XR:i:50 XE:i:149 unmapped 5 two 200 0 * two 200 0 ATGCATGC qqqqqqqq XQ:i:0 XR:i:0 XE:i:200 hascigar 5 two 200 0 6M2S two 200 0 ATGCATGC qqqqqqqq XQ:i:8 XR:i:6 XE:i:200 s1 0 one 300 20 2M * 0 0 AT qq XQ:i:2 XR:i:2 XE:i:301 su1 4 * 0 0 * * 0 0 AT qq XQ:i:0 XR:i:0 XE:i:0 su2 5 two 400 0 * two 400 0 AT qq XQ:i:0 XR:i:0 XE:i:400 su3 4 one 500 0 2M * 0 0 AT qq XQ:i:2 XR:i:2 XE:i:500