Mercurial > repos > yqiancolumbia > ctk

changeset 1:e7d962da0397 draft

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planemo upload for repository https://toolshed.g2.bx.psu.edu/view/yqiancolumbia/ctk/7621d36a4e9c commit 81ece2551cea27cbd0e718ef5b7a2fe8d4abd071-dirty
author yqiancolumbia
date Mon, 30 Apr 2018 05:00:08 -0400
parents 7621d36a4e9c
children ba62b6bab010
files tool_sheds_conf.xml
diffstat 1 files changed, 50 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_sheds_conf.xml	Mon Apr 30 05:00:08 2018 -0400
@@ -0,0 +1,50 @@
+<?xml version='1.0' encoding='utf-8'?>
+<toolbox>
+  <section id="ctk" name="CTK">
+    <tool file="ctk/fastqFilter.xml" />
+    <tool file="ctk/trimming3.xml" />
+    <tool file="../shed_tools/toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/01d94df2e32a/cutadapt/cutadapt.xml" guid="toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.6">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>cutadapt</repository_name>
+        <repository_owner>lparsons</repository_owner>
+        <installed_changeset_revision>01d94df2e32a</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.6</id>
+        <version>1.6</version>
+    </tool>
+    <tool file="ctk/fastq2collapse.xml" />
+    <tool file="ctk/stripBarcode.xml" />
+    <tool file="../shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/bwa/4d82cf59895e/bwa/bwa.xml" guid="toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.16.2">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>bwa</repository_name>
+        <repository_owner>devteam</repository_owner>
+        <installed_changeset_revision>4d82cf59895e</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/devteam/bwa/bwa/0.7.16.2</id>
+        <version>0.7.16.2</version>
+    </tool>
+    <tool file="../shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/af7c50162f0b/bam_to_sam/bam_to_sam.xml" guid="toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0">
+      <tool_shed>toolshed.g2.bx.psu.edu</tool_shed>
+        <repository_name>bam_to_sam</repository_name>
+        <repository_owner>devteam</repository_owner>
+        <installed_changeset_revision>af7c50162f0b</installed_changeset_revision>
+        <id>toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0</id>
+        <version>2.0</version>
+    </tool>
+    <tool file="ctk/parseAlignment.xml" />
+    <tool file="ctk/removeRNA.xml" />
+    <tool file="ctk/tag2collapse.xml" />
+    <!-- <tool file="ctk/selectRow.xml" /> --> 
+    <tool file="filters/compare.xml" />
+    <tool file="ctk/getMutationType.xml" />
+    <tool file="ctk/T2C.xml" />
+    <tool file="ctk/bed2rgb.xml" />
+    <tool file="filters/catWrapper.xml" />
+    <!-- <tool file="ctk/reverseComplement.xml" /> -->
+    <tool file="ctk/bed2annotation.xml" />
+    <tool file="ctk/tag2peak.xml" />
+    <tool file="filters/cutWrapper.xml" />
+    <tool file="ctk/tag2profile.xml" />
+    <tool file="ctk/getMutationType.xml" />
+    <tool file="ctk/CIMS.xml" />
+    <tool file="ctk/CITS.xml" />
+</section>
+</toolbox>