Mercurial > repos > yufei-luo > bwa_0_7_5

changeset 3:8409cff2d740 draft

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corrected the bug
author yufei-luo
date Fri, 29 Nov 2013 04:59:38 -0500
parents 2c7b77f5919f
children 22449c3a0b7f
files bwa_0_7_5/bwa_0_7_5.py
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/bwa_0_7_5/bwa_0_7_5.py	Mon Aug 12 08:53:36 2013 -0400
+++ b/bwa_0_7_5/bwa_0_7_5.py	Fri Nov 29 04:59:38 2013 -0500
@@ -225,7 +225,7 @@
     if args.genAlignType == 'paired':
         cmd = 'bwa mem %s %s %s %s %s > %s' % ( start_cmds, ref_file_name, fastq, rfastq, end_cmds, args.output )
     else:
-        cmd = 'bwa mem %s %s %s > %s' % ( start_cmds, ref_file_name, fastq, end_cmds, args.output )
+        cmd = 'bwa mem %s %s %s %s > %s' % ( start_cmds, ref_file_name, fastq, end_cmds, args.output )
 
   # perform alignments
     buffsize = 1048576