Mercurial > repos > yufei-luo > differential_expression_analysis_pipeline_for_rnaseq_data
comparison deseq/differential_expression_analysis_pipeline_for_rnaseq_data-a03838a6eb54/DiffExpAnal/DESeqTools/histoRawp.R @ 10:6e573fd3c41b draft
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| author | yufei-luo |
|---|---|
| date | Mon, 13 May 2013 10:06:30 -0400 |
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| 9:a03838a6eb54 | 10:6e573fd3c41b |
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| 1 # Marie-Anges Dillies | |
| 2 # histoRawp | |
| 3 # histogram of raw p-values | |
| 4 | |
| 5 # input : res, OUT_histoRawpName | |
| 6 # output : histogram (png) | |
| 7 | |
| 8 | |
| 9 histoRawp <- function( res, OUT_histoRawpName, out = TRUE ){ | |
| 10 | |
| 11 if (out) png( file=OUT_histoRawpName ) | |
| 12 | |
| 13 ind <- grep("val", colnames(res)) | |
| 14 hist( res[,ind], nclass=50, xlab="Raw p-values", main="", col="skyblue" ) | |
| 15 | |
| 16 if (out) dev.off() | |
| 17 } | |
| 18 | |
| 19 |