Mercurial > repos > yufei-luo > differential_expression_analysis_pipeline_for_rnaseq_data
comparison deseq/differential_expression_analysis_pipeline_for_rnaseq_data-a03838a6eb54/DiffExpAnal/listInputs.xml @ 10:6e573fd3c41b draft
Uploaded
| author | yufei-luo |
|---|---|
| date | Mon, 13 May 2013 10:06:30 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 9:a03838a6eb54 | 10:6e573fd3c41b |
|---|---|
| 1 <tool id="listInputs" name="listInputs"> | |
| 2 <description>Give a list of input files from different conditions/groups for DESeq analysis, DESeq can then charge these input files from the given list.</description> | |
| 3 <command interpreter="perl"> listInputs.pl $inputFromGroup1 $inputFromGroup2 $output | |
| 4 </command> | |
| 5 | |
| 6 <inputs> | |
| 7 <param name="inputFromGroup1" type="data" format="tabular" label="Please choose your file from group1."/> | |
| 8 <param name="inputFromGroup2" type="data" format="tabular" label="Please choose your file from group2."/> | |
| 9 </inputs> | |
| 10 | |
| 11 <outputs> | |
| 12 <data format="txt" name="output" label="listInputs Output"/> | |
| 13 </outputs> | |
| 14 | |
| 15 <help> | |
| 16 This tool can facilate the the chargement for DESeq tool. | |
| 17 Example: | |
| 18 From group1, we have input1. | |
| 19 From group2, we have input2. | |
| 20 This tool will give us a list like: | |
| 21 fileID=1 input1 group1 | |
| 22 fileID=2 input2 group2 | |
| 23 Where the value of fileID is unique for each input file. | |
| 24 </help> | |
| 25 </tool> |