Mercurial > repos > yufei-luo > differential_expression_analysis_pipeline_for_rnaseq_data
view deseq/differential_expression_analysis_pipeline_for_rnaseq_data-a03838a6eb54/DiffExpAnal/countNumber_parallel.xml @ 10:6e573fd3c41b draft
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author | yufei-luo |
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date | Mon, 13 May 2013 10:06:30 -0400 |
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<tool id="countNumber_parallel" name="countNumber_parallel"> <description>Calculate the number of reads(annotations) overlapping for each transcript.</description> <command interpreter="python"> countNumber_parallel.py -i $inputTxt -o $outputTxt $tar $outputTarFile </command> <inputs> <param name="inputTxt" type="data" format="txt" label="Please choose your txt format file (which contains a list of gff3 overlapping results files)."/> <param name="tar" type="boolean" truevalue="-t" falsevalue="" checked="False" label="tar option" help="This option creates a tar file for all out results" /> </inputs> <outputs> <data format="txt" name="outputTxt" label="countNumber Output"/> <data name="outputTarFile" format="tar"> <filter>tar</filter> </data> </outputs> </tool>