Mercurial > repos > yufei-luo > differential_expression_analysis_pipeline_for_rnaseq_data
annotate deseq/differential_expression_analysis_pipeline_for_rnaseq_data-a03838a6eb54/DiffExpAnal/countNumber_parallel.xml @ 10:6e573fd3c41b draft
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| author | yufei-luo |
|---|---|
| date | Mon, 13 May 2013 10:06:30 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| 10 | 1 <tool id="countNumber_parallel" name="countNumber_parallel"> |
| 2 | |
| 3 <description>Calculate the number of reads(annotations) overlapping for each transcript.</description> | |
| 4 <command interpreter="python"> countNumber_parallel.py -i $inputTxt -o $outputTxt $tar $outputTarFile | |
| 5 </command> | |
| 6 | |
| 7 <inputs> | |
| 8 <param name="inputTxt" type="data" format="txt" label="Please choose your txt format file (which contains a list of gff3 overlapping results files)."/> | |
| 9 <param name="tar" type="boolean" truevalue="-t" falsevalue="" checked="False" label="tar option" help="This option creates a tar file for all out results" /> | |
| 10 </inputs> | |
| 11 | |
| 12 <outputs> | |
| 13 <data format="txt" name="outputTxt" label="countNumber Output"/> | |
| 14 <data name="outputTarFile" format="tar"> | |
| 15 <filter>tar</filter> | |
| 16 </data> | |
| 17 </outputs> | |
| 18 | |
| 19 </tool> |