Mercurial > repos > yufei-luo > s_mart

annotate SMART/DiffExpAnal/countNumber.xml @ 31:0ab839023fe4

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 94ab73e8a190
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
18
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1 <tool id="countNumber" name="countNumber">
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2 <description>Calculate the number of reads(annotations) overlapping for each transcript.</description>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3 <command interpreter="perl"> countNumber.pl $input $outputCSV
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
4 </command>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6 <inputs>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7 <param name="input" type="data" format="gff3" label="Please choose your gff3 format file (which contains the number of overlaps)."/>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8 </inputs>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
9
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10 <outputs>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11 <data format="csv" name="outputCSV" label="countNumber Output"/>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
12 </outputs>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14 <help>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15 </help>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
16 </tool>