|
18
|
1 ----------
|
|
|
2 | NAME |
|
|
|
3 ----------
|
|
|
4 S-MART
|
|
|
5
|
|
|
6
|
|
|
7 Description
|
|
|
8 -----------
|
|
|
9 Several tools are now available for mapping high-throughput sequencing data from a genome, but few can extract biological knowledge from the mapped reads. We have developed a toolbox, S-MART, which handles mapped RNA-Seq and ChIP-Seq data.
|
|
|
10
|
|
|
11 S-MART is an intuitive and lightweight tool, performing several tasks that are usually required during the analysis of mapped RNA-Seq and ChIP-Seq reads, including data selection and data visualization.
|
|
|
12
|
|
|
13 S-MART does not require a computer science background and thus can be used by all biologists through a graphical interface. S-MART can run on any personal computer, yielding results within an hour for most queries.
|
|
|
14
|
|
|
15
|
|
31
|
16 Instructions
|
|
|
17 ------------
|
|
|
18 Installation instructions and the user guide are available in the file "doc.pdf".
|
|
|
19
|
|
|
20
|
|
18
|
21 Copyright
|
|
|
22 ---------
|
|
31
|
23 Copyright INRA-URGI 2009-2010
|
|
18
|
24
|
|
|
25
|
|
|
26 Authors
|
|
|
27 -------
|
|
|
28 Matthias Zytnicki
|
|
|
29
|
|
|
30
|
|
|
31 Contact
|
|
|
32 -------
|
|
|
33 urgi-contact@versailles.inra.fr
|
|
|
34
|
|
|
35
|
|
|
36 License
|
|
|
37 -------
|
|
|
38 This library is distributed under the terms of the CeCILL license
|
|
|
39 (http://www.cecill.info/index.en.html).
|
|
|
40 See the LICENSE.txt file.
|
|
|
41
|
|
|
42
|
|
|
43 Acknowledgements
|
|
|
44 ----------------
|
|
31
|
45 This product needs the following softwares :
|
|
|
46 * R, under the GNU General Public License
|
|
|
47 * MySQL, under the GNU General Public License
|
|
|
48 * Python, under the Python License, compatible with the GNU General Public License
|
|
|
49 * MySQL for Python, under the GNU General Public License
|
|
|
50 * Java, under the GNU General Public License
|
|
|
51
|
