Mercurial > repos > yufei-luo > s_mart

annotate SMART/bacteriaRegulatoryRegion_Detection/colorGff.xml @ 31:0ab839023fe4

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 94ab73e8a190
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
18
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1 <tool id="colorGff" name="colorGff">
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2 <description> Parses a DOOR report file and writes the information in a gff3 out file. </description>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3 <command interpreter="perl">
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
4 colorGff.pl -i $inputFile -c $RGBcode > $outputFile
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5 </command>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7 <inputs>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8 <param name="inputFile" type="data" label="Input File" format="gff"/>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
9 <param name="RGBcode" type="text" value="250 128 114" help="RGB code is necessary for choosing the color."/>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10 </inputs>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
12 <outputs>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13 <data format="gff3" name="outputFile" label="[colorGff] Output File"/>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14 </outputs>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
16 <help>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
17 Command example: perl colorGff.pl -i trans_covUp5_nbEUp10_lgUp50.gff3 -c "250 128 114" > trans_covUp5_nbEUp10_lgUp50_c.gff3
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
18 </help>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
19 </tool>