Mercurial > repos > yufei-luo > s_mart
comparison SMART/bacteriaRegulatoryRegion_Detection/colorGff.xml @ 31:0ab839023fe4
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author | m-zytnicki |
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date | Tue, 30 Apr 2013 14:33:21 -0400 |
parents | 94ab73e8a190 |
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30:5677346472b5 | 31:0ab839023fe4 |
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1 <tool id="colorGff" name="colorGff"> | |
2 <description> Parses a DOOR report file and writes the information in a gff3 out file. </description> | |
3 <command interpreter="perl"> | |
4 colorGff.pl -i $inputFile -c $RGBcode > $outputFile | |
5 </command> | |
6 | |
7 <inputs> | |
8 <param name="inputFile" type="data" label="Input File" format="gff"/> | |
9 <param name="RGBcode" type="text" value="250 128 114" help="RGB code is necessary for choosing the color."/> | |
10 </inputs> | |
11 | |
12 <outputs> | |
13 <data format="gff3" name="outputFile" label="[colorGff] Output File"/> | |
14 </outputs> | |
15 | |
16 <help> | |
17 Command example: perl colorGff.pl -i trans_covUp5_nbEUp10_lgUp50.gff3 -c "250 128 114" > trans_covUp5_nbEUp10_lgUp50_c.gff3 | |
18 </help> | |
19 </tool> |