Mercurial > repos > yufei-luo > s_mart

annotate SMART/bacteriaRegulatoryRegion_Detection/prepareAnnot.xml @ 31:0ab839023fe4

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 94ab73e8a190
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
18
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
1 <tool id="prepareAnnotation" name="prepare annotation file">
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
2 <description>Prepares Annotation file -> clusterizes, filters exon and sorts annotations.</description>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
3 <command interpreter="bash"> prepareAnnot.sh $inputFile $outputFile </command>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
4 <inputs>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
5 <param name="inputFile" type="data" label="Input File" format="gff"/>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
6 </inputs>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
7
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
8 <outputs>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
9 <data format="gff3" name="outputFile" label="[prepareAnnotation] Output File"/>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
10 </outputs>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
11
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
12 <help>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
13 command example: sh prepareAnnot.sh NC_011744r_annot_tmp1.gff NC_011744r_annot_pre1.gff
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
14 </help>
94ab73e8a190 Uploaded
m-zytnicki
parents:
diff changeset
15 </tool>