Mercurial > repos > yufei-luo > s_mart

annotate SMART/bacteriaRegulatoryRegion_Detection/prepareAnnot.xml @ 18:94ab73e8a190

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author m-zytnicki
date Mon, 29 Apr 2013 03:20:15 -0400
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1 <tool id="prepareAnnotation" name="prepare annotation file">
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2 <description>Prepares Annotation file -> clusterizes, filters exon and sorts annotations.</description>
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3 <command interpreter="bash"> prepareAnnot.sh $inputFile $outputFile </command>
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4 <inputs>
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5 <param name="inputFile" type="data" label="Input File" format="gff"/>
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6 </inputs>
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8 <outputs>
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9 <data format="gff3" name="outputFile" label="[prepareAnnotation] Output File"/>
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10 </outputs>
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12 <help>
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13 command example: sh prepareAnnot.sh NC_011744r_annot_tmp1.gff NC_011744r_annot_pre1.gff
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14 </help>
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15 </tool>