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annotate commons/pyRepetUnit/fastaTranslation/allFrames/tests/Test_F_TranslateAfastaFileInAllFrameAndReplaceStopsByX.py @ 31:0ab839023fe4

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author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 94ab73e8a190
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1 import unittest
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2 import os
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3 from commons.core.utils.FileUtils import FileUtils
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4
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5 class Test_F_TranslateAfastaFileInAllFrameAndReplaceStopsByX(unittest.TestCase):
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6
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7 def setUp(self):
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8 self._inputFile = "./datas/ConsensusTestFile_nt.fsa"
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9 self._outputFile = "./datas/PreprocessOuputFile"
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10 self._prg = "translateAfastaFileInAllFrameAndReplaceStopsByX_script.py"
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13 def testAcceptanceTranslateAfastaFileInAllFrameAndReplaceStopsByX_script(self):
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14 cmd = self._prg
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15 cmd += " -i %s" % ( self._inputFile )
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16 cmd += " -o %s" % ( self._outputFile )
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17 os.system( cmd )
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18 self.assertTrue(FileUtils.are2FilesIdentical( self._outputFile, "./datas/ConsensusTestFile_aaWithoutStop.fsa"))
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19 os.system( "rm " + self._outputFile )
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22 if __name__ == "__main__":
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23 unittest.main()