Mercurial > repos > yufei-luo > s_mart

comparison commons/pyRepetUnit/fastaTranslation/allFrames/tests/Test_F_TranslateAfastaFileInAllFrameAndReplaceStopsByX.py @ 31:0ab839023fe4

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author m-zytnicki
date Tue, 30 Apr 2013 14:33:21 -0400
parents 94ab73e8a190
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30:5677346472b5 31:0ab839023fe4
1 import unittest
2 import os
3 from commons.core.utils.FileUtils import FileUtils
4
5 class Test_F_TranslateAfastaFileInAllFrameAndReplaceStopsByX(unittest.TestCase):
6
7 def setUp(self):
8 self._inputFile = "./datas/ConsensusTestFile_nt.fsa"
9 self._outputFile = "./datas/PreprocessOuputFile"
10 self._prg = "translateAfastaFileInAllFrameAndReplaceStopsByX_script.py"
11
12
13 def testAcceptanceTranslateAfastaFileInAllFrameAndReplaceStopsByX_script(self):
14 cmd = self._prg
15 cmd += " -i %s" % ( self._inputFile )
16 cmd += " -o %s" % ( self._outputFile )
17 os.system( cmd )
18 self.assertTrue(FileUtils.are2FilesIdentical( self._outputFile, "./datas/ConsensusTestFile_aaWithoutStop.fsa"))
19 os.system( "rm " + self._outputFile )
20
21
22 if __name__ == "__main__":
23 unittest.main()