6
+ − 1 #! /usr/bin/env python
+ − 2 #
+ − 3 # Copyright INRA-URGI 2009-2010
+ − 4 #
+ − 5 # This software is governed by the CeCILL license under French law and
+ − 6 # abiding by the rules of distribution of free software. You can use,
+ − 7 # modify and/ or redistribute the software under the terms of the CeCILL
+ − 8 # license as circulated by CEA, CNRS and INRIA at the following URL
+ − 9 # "http://www.cecill.info".
+ − 10 #
+ − 11 # As a counterpart to the access to the source code and rights to copy,
+ − 12 # modify and redistribute granted by the license, users are provided only
+ − 13 # with a limited warranty and the software's author, the holder of the
+ − 14 # economic rights, and the successive licensors have only limited
+ − 15 # liability.
+ − 16 #
+ − 17 # In this respect, the user's attention is drawn to the risks associated
+ − 18 # with loading, using, modifying and/or developing or reproducing the
+ − 19 # software by the user in light of its specific status of free software,
+ − 20 # that may mean that it is complicated to manipulate, and that also
+ − 21 # therefore means that it is reserved for developers and experienced
+ − 22 # professionals having in-depth computer knowledge. Users are therefore
+ − 23 # encouraged to load and test the software's suitability as regards their
+ − 24 # requirements in conditions enabling the security of their systems and/or
+ − 25 # data to be ensured and, more generally, to use and operate it in the
+ − 26 # same conditions as regards security.
+ − 27 #
+ − 28 # The fact that you are presently reading this means that you have had
+ − 29 # knowledge of the CeCILL license and that you accept its terms.
+ − 30 #
+ − 31 """
+ − 32 Test if the configuration is sound
+ − 33 """
+ − 34
+ − 35 import sys
+ − 36 import os
+ − 37 import subprocess
+ − 38
+ − 39 # Test Python files
+ − 40 try :
+ − 41 from SMART.Java.Python.misc.RPlotter import *
+ − 42 except:
+ − 43 print "Cannot find Python scripts! Update PYTHONPATH (currently %s) environment variable and see configuration in the documentation!" % (os.environ["PYTHONPATH"] if "PYTHONPATH" in os.environ else "empty")
+ − 44 sys.exit(3)
+ − 45
+ − 46 try :
+ − 47 from SMART.Java.Python.mySql.MySqlTranscriptTable import *
+ − 48 from SMART.Java.Python.mySql.MySqlConnection import *
+ − 49 except:
+ − 50 print "SQLite is not installed ! Please read the documentation!"
+ − 51 sys.exit(4)
+ − 52
+ − 53
+ − 54 if __name__ == "__main__":
+ − 55
+ − 56 print "Python scripts are correctly read."
+ − 57
+ − 58 # Test mySQL
+ − 59 connection = MySqlConnection()
+ − 60 table = MySqlTranscriptTable(connection)
+ − 61
+ − 62 try:
+ − 63 table.createTranscriptTable()
+ − 64 except:
+ − 65 print "Cannot connect to the SQLite database! See configuration in the documentation!"
+ − 66 sys.exit(5)
+ − 67
+ − 68 print "SQLite database is correctly set up."
+ − 69
+ − 70
+ − 71 # Test R
+ − 72 fileName = "tmpFile.R"
+ − 73 file = open(fileName, "w")
+ − 74 file.write("?licence\n")
+ − 75 file.close()
+ − 76 rCommand = "R"
+ − 77 if "SMARTRPATH" in os.environ:
+ − 78 rCommand = os.environ["SMARTRPATH"]
+ − 79 command = "\"%s\" CMD BATCH %s" % (rCommand, fileName)
+ − 80 status = subprocess.call(command, shell=True)
+ − 81 os.remove(fileName)
+ − 82 outputFileName = "%sout" % (fileName)
+ − 83 if os.path.exists(outputFileName):
+ − 84 os.remove(outputFileName)
+ − 85
+ − 86 if status != 0:
+ − 87 print "Problem with the execution of R script (command '%s' did not work, current directory is %s, status is %d)! See configuration in the documentation!" % (command, os.getcwd(), status)
+ − 88 sys.exit(6)
+ − 89
+ − 90 line = {0: 1, 1: 2}
+ − 91 pngFileName = "tmpFile.png"
+ − 92 plotter = RPlotter(pngFileName)
+ − 93 plotter.addLine(line)
+ − 94 try:
+ − 95 plotter.plot()
+ − 96 except:
+ − 97 print "Problem with the execution of R script: library 'RColorBrewer' is missing! See configuration in the documentation!"
+ − 98 sys.exit(7)
+ − 99 os.remove(pngFileName)
+ − 100
+ − 101 print "R is available."
+ − 102
+ − 103 print "Set up is fine! Enjoy S-MART!"
