Mercurial > repos > yufei-luo > s_mart

annotate SMART/galaxy/FindOverlaps_optim.xml @ 11:2da30502c2f1

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Updated CompareOverlappingSmallQuery.xml
author m-zytnicki
date Thu, 14 Mar 2013 05:37:08 -0400
parents 769e306b7933
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
6
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
1 <tool id="findOverlaps" name="findOverlaps">
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
2 <description>Finds the overlapped reference reads.</description>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
3 <command interpreter="python">
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
4 ../Java/Python/FindOverlaps_optim.py -i $inputRef -j $inputQ -o $outputFileGff
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
5 </command>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
6
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
7 <inputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
8 <param name="inputRef" type="data" label="Input Reference File" format="gff3"/>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
9 <param name="inputQ" type="data" label="Input Query File" format="gff3"/>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
10 </inputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
11
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
12 <outputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
13 <data name="outputFileGff" format="gff3"/>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
14 </outputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
15
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
16 </tool>