annotate SMART/galaxy/ConvertTranscriptFile_SamToGff2.xml @ 15:440ceca58672

Uploaded
author m-zytnicki
date Mon, 22 Apr 2013 11:08:07 -0400
parents 769e306b7933
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
6
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
1 <tool id="ConvertTranscriptFile_SamToGff2" name="Sam -> Gff2">
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
2 <description>Convert Sam File to Gff2 File.</description>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
3 <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f sam -o $outputFile -g gff2 yes 2>$logFile </command>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
4 <inputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
5 <param name="inputFile" type="data" label="Input File" format="sam"/>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
6 </inputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
7
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
8 <outputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
9 <data format="gff" name="outputFile" label="[sam -> gff2] Output File"/>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
10 <data format="txt" name="logFile" label="[sam -> gff2] Log File"/>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
11 </outputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
12
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
13 <help>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
14 </help>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
15 </tool>