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annotate SMART/galaxy/FindOverlaps_optim.xml @ 34:529e3e6a0954

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author m-zytnicki
date Tue, 30 Apr 2013 14:35:27 -0400
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1 <tool id="findOverlaps" name="findOverlaps">
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2 <description>Finds the overlapped reference reads.</description>
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3 <command interpreter="python">
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4 ../Java/Python/FindOverlaps_optim.py -i $inputRef -j $inputQ -o $outputFileGff
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5 </command>
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6
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7 <inputs>
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8 <param name="inputRef" type="data" label="Input Reference File" format="gff3"/>
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9 <param name="inputQ" type="data" label="Input Query File" format="gff3"/>
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10 </inputs>
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11
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12 <outputs>
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13 <data name="outputFileGff" format="gff3"/>
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14 </outputs>
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15
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16 </tool>