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1 <tool id="CountReadGCPercent" name="count read GCpercent">
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2 <description>Count GC percent for each read against a genome.</description>
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3 <command interpreter="python"> ../Java/Python/CountReadGCPercent.py -i $inputFastaFile -j $inputGffFile -o $outputFile</command>
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4 <inputs>
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5 <param name="inputFastaFile" type="data" label="Input reference fasta File" format="fasta"/>
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6 <param name="inputGffFile" type="data" label="Input File" format="gff3"/>
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7 </inputs>
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8
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9 <outputs>
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10 <data format="gff3" name="outputFile" label="[CountReadGCPercent] Output File"/>
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11 </outputs>
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12
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13 <help>
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15
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14 Count the GC% of a FASTA file.
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15 </help>
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16 </tool>
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