annotate SMART/galaxy/ConvertTranscriptFile_SamToCsv.xml @ 6:769e306b7933

Change the repository level.
author yufei-luo
date Fri, 18 Jan 2013 04:54:14 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
6
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
1 <tool id="ConvertTranscriptFile_SamToCsv" name="Sam -> Csv">
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
2 <description>Convert Sam File to Csv File.</description>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
3 <command interpreter="python"> ../Java/Python/convertTranscriptFile.py -i $inputFile -f sam -o $outputFile -g csv yes 2>$logFile </command>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
4 <inputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
5 <param name="inputFile" type="data" label="Input File" format="sam"/>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
6 </inputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
7
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
8 <outputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
9 <data format="csv" name="outputFile" label="[sam -> csv] Output File"/>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
10 <data format="txt" name="logFile" label="[sam -> csv] Log File"/>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
11 </outputs>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
12
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
13 <help>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
14 </help>
769e306b7933 Change the repository level.
yufei-luo
parents:
diff changeset
15 </tool>