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annotate SMART/galaxy/cleanGff.xml @ 6:769e306b7933

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author yufei-luo
date Fri, 18 Jan 2013 04:54:14 -0500
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1 <tool id="cleanGff" name="clean Gff">
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2 <description>Cleans a GFF file as given by NCBI and outpus a Gff3 file.</description>
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3 <command interpreter="python"> ../Java/Python/cleanGff.py -i $inputFile
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4 -t $type
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5 -o $outputFile
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6 </command>
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8 <inputs>
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9 <param name="inputFile" type="data" label="Input File" format="gff"/>
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10 <param name="type" type="text" value="tRNA,rRNA,ncRNA,CDS" label="tag option, compulsory option" help="lists of comma separated types that you want to keep.EX: ncRNA,tRNA,rRNA,CDS"/>
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11 </inputs>
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13 <outputs>
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14 <data format="gff3" name="outputFile" label="[cleanGff] Output File"/>
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15 </outputs>
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16
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17 </tool>
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