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1 import unittest
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2 import os
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3 from SMART.Java.Python.misc import Utils
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4
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5 class Test_F_mappingToCoordinates(unittest.TestCase):
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6
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7
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8 def setUp(self):
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9 self._inputFileName = 'inputMTC.sam'
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10 self._outputFileName = 'outputGff.gff3'
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11 self._expOutputFileName = '../TestFiles/expOutputGff.gff3'
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12
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13 def tearDown(self):
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14 os.remove(self._outputFileName)
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15
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16 def test_run_default_option(self):
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17 cmd = 'python ../mappingToCoordinates.py -i ../TestFiles/%s -f sam -o %s -v 0' % (self._inputFileName, self._outputFileName)
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18 os.system(cmd)
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19 self.assertTrue(Utils.diff(self._outputFileName, self._expOutputFileName))
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20
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21 if __name__ == "__main__":
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22 unittest.main()
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