Mercurial > repos > yufei-luo > s_mart
annotate SMART/bacteriaRegulatoryRegion_Detection/coverageGff.xml @ 18:94ab73e8a190
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author | m-zytnicki |
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date | Mon, 29 Apr 2013 03:20:15 -0400 |
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18 | 1 <tool id="coverageGff" name="coverage Gff"> |
2 <description>Computes reads coverage form a "nbElements" tag and writes the calculated coverage in a gff3 out file.</description> | |
3 <command interpreter="perl"> coverageGff.pl -i $inputFile -l $readSize > $outputFile </command> | |
4 <inputs> | |
5 <param name="inputFile" type="data" label="Input File" format="gff"/> | |
6 <param name="readSize" type="integer" value="38" help="The size of read, default: 38nt"/> | |
7 | |
8 </inputs> | |
9 | |
10 <outputs> | |
11 <data format="gff3" name="outputFile" label="[coveragePl] Output File"/> | |
12 </outputs> | |
13 | |
14 <help> | |
15 command example: perl coverageGff.pl -i *_trans_inIG.gff > *_trans_inIG_cov.gff | |
16 </help> | |
17 </tool> |