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annotate smart_toolShed/SMART/Java/README.txt @ 0:e0f8dcca02ed

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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author yufei-luo
date Thu, 17 Jan 2013 10:52:14 -0500
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1 ----------
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2 | NAME |
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3 ----------
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4 S-MART
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7 Description
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8 -----------
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9 Several tools are now available for mapping high-throughput sequencing data from a genome, but few can extract biological knowledge from the mapped reads. We have developed a toolbox, S-MART, which handles mapped RNA-Seq and ChIP-Seq data.
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11 S-MART is an intuitive and lightweight tool, performing several tasks that are usually required during the analysis of mapped RNA-Seq and ChIP-Seq reads, including data selection and data visualization.
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13 S-MART does not require a computer science background and thus can be used by all biologists through a graphical interface. S-MART can run on any personal computer, yielding results within an hour for most queries.
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16 Instructions
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17 ------------
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18 Installation instructions and the user guide are available in the file "doc.pdf".
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21 Copyright
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22 ---------
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23 Copyright INRA-URGI 2009-2010
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26 Authors
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27 -------
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28 Matthias Zytnicki
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31 Contact
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32 -------
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33 urgi-contact@versailles.inra.fr
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36 License
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37 -------
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38 This library is distributed under the terms of the CeCILL license
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39 (http://www.cecill.info/index.en.html).
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40 See the LICENSE.txt file.
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43 Acknowledgements
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44 ----------------
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45 This product needs the following softwares :
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46 * R, under the GNU General Public License
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47 * MySQL, under the GNU General Public License
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48 * Python, under the Python License, compatible with the GNU General Public License
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49 * MySQL for Python, under the GNU General Public License
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50 * Java, under the GNU General Public License
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51