Mercurial > repos > yufei-luo > s_mart

annotate smart_toolShed/commons/core/checker/test/Test_ConfigValue.py @ 0:e0f8dcca02ed

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Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
author yufei-luo
date Thu, 17 Jan 2013 10:52:14 -0500
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children
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e0f8dcca02ed Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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diff changeset
1 import unittest
e0f8dcca02ed Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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2 from commons.core.checker.ConfigValue import ConfigValue
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3
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4 class Test_ConfigValue(unittest.TestCase):
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5
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6 def setUp(self):
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7 self._iConfigValue = ConfigValue()
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8
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9 def test__eq__True(self):
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10 self._iConfigValue.dOptionsValues4Sections = {
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11 "dir_name" : {"work_dir":"toto"},
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12 "organism" : {"abbreviation":"T.aestivum",
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13 "genus":"triticum",
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14 "species":"aestivum",
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15 "common_name":"wheat",
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16 "comment":""}
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17 }
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18 iConfigValue1 = ConfigValue()
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19 iConfigValue1.dOptionsValues4Sections = {
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20 "dir_name" : {"work_dir":"toto"},
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21 "organism" : {"abbreviation":"T.aestivum",
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22 "genus":"triticum",
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23 "species":"aestivum",
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24 "common_name":"wheat",
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25 "comment":""}
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26 }
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27
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28 self.assertEqual(self._iConfigValue, iConfigValue1)
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29
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30 def test__eq__False_not_same_section(self):
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31 self._iConfigValue.dOptionsValues4Sections = {
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32 "dir_name" : {"work_dir":"toto"},
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33 "organisms" : {"abbreviation":"T.aestivum",
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34 "genus":"triticum",
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35 "species":"aestivum",
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36 "common_name":"wheat",
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37 "comment":""}
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38 }
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39 iConfigValue1 = ConfigValue()
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40 iConfigValue1.dOptionsValues4Sections = {
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41 "dir_name" : {"work_dir":"toto"},
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42 "organism" : {"abbreviation":"T.aestivum",
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43 "genus":"triticum",
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44 "species":"aestivum",
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45 "common_name":"wheat",
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46 "comment":""}
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47 }
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48
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49 self.assertNotEqual(self._iConfigValue, iConfigValue1)
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50
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51
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52 def test__eq__False_not_same_option(self):
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53 self._iConfigValue.dOptionsValues4Sections = {
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54 "dir_name" : {"work_dir":"toto"},
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55 "organism" : {"abbreviation":"T.aestivum",
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56 "family":"triticum",
e0f8dcca02ed Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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57 "species":"aestivum",
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58 "common_name":"wheat",
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59 "comment":""}
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60 }
e0f8dcca02ed Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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61 iConfigValue1 = ConfigValue()
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62 iConfigValue1.dOptionsValues4Sections = {
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63 "dir_name" : {"work_dir":"toto"},
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64 "organism" : {"abbreviation":"T.aestivum",
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65 "genus":"triticum",
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66 "species":"aestivum",
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67 "common_name":"wheat",
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68 "comment":""}
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69 }
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70
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71 self.assertNotEqual(self._iConfigValue, iConfigValue1)
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72
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73 def test__eq__False_not_same_value(self):
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74 self._iConfigValue.dOptionsValues4Sections = {
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75 "dir_name" : {"work_dir":"toto"},
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76 "organism" : {"abbreviation":"T.aestivum",
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77 "genus":"vitis",
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78 "species":"aestivum",
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79 "common_name":"wheat",
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80 "comment":""}
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81 }
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82 iConfigValue1 = ConfigValue()
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83 iConfigValue1.dOptionsValues4Sections = {
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84 "dir_name" : {"work_dir":"toto"},
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85 "organism" : {"abbreviation":"T.aestivum",
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86 "genus":"triticum",
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87 "species":"aestivum",
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88 "common_name":"wheat",
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89 "comment":""}
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90 }
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91
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92 self.assertNotEqual(self._iConfigValue, iConfigValue1)
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93
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94 def test_has_section_true(self):
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95 self._iConfigValue.dOptionsValues4Sections = {
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96 "dir_name" : {"work_dir":"toto"},
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97 "organism" : {"abbreviation":"T.aestivum",
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98 "genus":"triticum",
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99 "species":"aestivum",
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100 "common_name":"wheat",
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101 "comment":""}
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102 }
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103
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104 obsSectionExist = self._iConfigValue.has_section("organism")
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105 self.assertTrue(obsSectionExist)
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106
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107 def test_has_section_false(self):
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108 self._iConfigValue.dOptionsValues4Sections = {
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109 "dir_name" : {"work_dir":"toto"},
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110 "organism" : {"abbreviation":"T.aestivum",
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111 "genus":"triticum",
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112 "species":"aestivum",
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113 "common_name":"wheat",
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114 "comment":""}
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115 }
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116
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117 obsSectionExist = self._iConfigValue.has_section("toto")
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118 self.assertFalse(obsSectionExist)
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119
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120 def test_has_option_true(self):
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121 self._iConfigValue.dOptionsValues4Sections = {
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122 "dir_name" : {"work_dir":"toto"},
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123 "organism" : {"abbreviation":"T.aestivum",
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124 "genus":"triticum",
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125 "species":"aestivum",
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126 "common_name":"wheat",
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127 "comment":""}
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128 }
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129
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130 obsOptionExist = self._iConfigValue.has_option("organism","genus")
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131 self.assertTrue(obsOptionExist)
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132
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133 def test_has_option_false(self):
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134 self._iConfigValue.dOptionsValues4Sections = {
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135 "dir_name" : {"work_dir":"toto"},
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136 "organism" : {"abbreviation":"T.aestivum",
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137 "genus":"triticum",
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138 "species":"aestivum",
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139 "common_name":"wheat",
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140 "comment":""}
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141 }
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142
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143 obsOptionExist = self._iConfigValue.has_option("organism","toto")
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144 self.assertFalse(obsOptionExist)
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145 obsOptionExist = self._iConfigValue.has_option("toto","genus")
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146 self.assertFalse(obsOptionExist)
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147
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148 def test_sections(self):
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149 self._iConfigValue.dOptionsValues4Sections = {
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150 "dir_name" : {"work_dir":"toto"},
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151 "organism" : {"abbreviation":"T.aestivum",
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152 "genus":"triticum",
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153 "species":"aestivum",
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154 "common_name":"wheat",
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155 "comment":""}
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156 }
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157 expListSections = ["dir_name", "organism"]
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158 obsListSections = self._iConfigValue.sections()
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159 self.assertEquals(expListSections, obsListSections)
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160
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161 def test_sections_empty_config(self):
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162 self._iConfigValue.dOptionsValues4Sections = {}
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163 expListSections = []
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164 obsListSections = self._iConfigValue.sections()
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165 self.assertEquals(expListSections, obsListSections)
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166
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167 def test_options(self):
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168 self._iConfigValue.dOptionsValues4Sections = {
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169 "dir_name" : {"work_dir":"toto"},
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170 "organism" : {"abbreviation":"T.aestivum",
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171 "genus":"triticum",
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172 "species":"aestivum",
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173 "common_name":"wheat",
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174 "comment":""}
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175 }
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176 expListOptions = ['abbreviation', 'common_name', 'genus', 'species', 'comment']
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177 obsListOptions = self._iConfigValue.options("organism")
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178 self.assertEquals(expListOptions, obsListOptions)
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179
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180 expListOptions = ["work_dir"]
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181 obsListOptions = self._iConfigValue.options("dir_name")
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182 self.assertEquals(expListOptions, obsListOptions)
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183
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184 def test_options_empty_config(self):
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185 self._iConfigValue.dOptionsValues4Sections = {}
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186 expListOptions = []
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187 obsListOptions = self._iConfigValue.options("toto")
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188 self.assertEquals(expListOptions, obsListOptions)
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189
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190 def test_set(self):
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191 self._iConfigValue.dOptionsValues4Sections = {}
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192 expDictOptionsValue = {"dir_name" : {"work_dir":"toto"}}
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193 self._iConfigValue.set("dir_name", "work_dir", "toto")
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194 obsDictOptionsValue = self._iConfigValue.dOptionsValues4Sections
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195 self.assertEquals(expDictOptionsValue, obsDictOptionsValue)
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196
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197 def test_get(self):
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198 self._iConfigValue.dOptionsValues4Sections = {
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199 "dir_name" : {"work_dir":"toto"},
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200 "organism" : {"abbreviation":"T.aestivum",
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201 "genus":"triticum",
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202 "species":"aestivum",
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203 "common_name":"wheat",
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204 "comment":""}
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205 }
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206 expValue = "aestivum"
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207 obsValue = self._iConfigValue.get("organism", "species")
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208 self.assertEquals(expValue, obsValue)
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209 expValue = None
e0f8dcca02ed Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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210 obsValue = self._iConfigValue.get("toto", "species")
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211 self.assertEquals(expValue, obsValue)
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212 expValue = None
e0f8dcca02ed Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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213 obsValue = self._iConfigValue.get("organism", "dummyopt")
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214 self.assertEquals(expValue, obsValue)
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215
e0f8dcca02ed Uploaded S-MART tool. A toolbox manages RNA-Seq and ChIP-Seq data.
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216 if __name__ == "__main__":
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217 unittest.main()