Mercurial > repos > yufei-luo > s_mart
comparison SMART/bacteriaRegulatoryRegion_Detection/splitTranscriptGff.xml @ 31:0ab839023fe4
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| author | m-zytnicki |
|---|---|
| date | Tue, 30 Apr 2013 14:33:21 -0400 |
| parents | 94ab73e8a190 |
| children |
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| 30:5677346472b5 | 31:0ab839023fe4 |
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| 1 <tool id="splitTranscriptGff" name="splitTranscriptGff"> | |
| 2 <description> Define UTRs and intergenic operonic regions from a transcript file and following a reference file </description> | |
| 3 <command interpreter="perl"> | |
| 4 splitTranscriptGff.pl -i $referenciesFile -j $transcriptsFile > $outputFile | |
| 5 </command> | |
| 6 | |
| 7 <inputs> | |
| 8 <param name="referenciesFile" type="data" label="Referencies Input File" format="gff" /> | |
| 9 <param name="transcriptsFile" type="data" label="Transcripts Input File" format="gff" /> | |
| 10 </inputs> | |
| 11 | |
| 12 <outputs> | |
| 13 <data format="gff3" name="outputFile" label="[splitTranscript] Output File"/> | |
| 14 </outputs> | |
| 15 | |
| 16 <help> | |
| 17 Note that iputs files should be sorted by increasing positions and that expressed referencies should be included in transcripts. | |
| 18 | |
| 19 Command example: perl splitTranscriptGff.pl -i annotations.gff -j transcripts.gff > TUTag.gff3 | |
| 20 </help> | |
| 21 </tool> |