Mercurial > repos > yufei-luo > s_mart
view SMART/bacteriaRegulatoryRegion_Detection/splitTranscriptGff.xml @ 31:0ab839023fe4
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author | m-zytnicki |
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date | Tue, 30 Apr 2013 14:33:21 -0400 |
parents | 94ab73e8a190 |
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<tool id="splitTranscriptGff" name="splitTranscriptGff"> <description> Define UTRs and intergenic operonic regions from a transcript file and following a reference file </description> <command interpreter="perl"> splitTranscriptGff.pl -i $referenciesFile -j $transcriptsFile > $outputFile </command> <inputs> <param name="referenciesFile" type="data" label="Referencies Input File" format="gff" /> <param name="transcriptsFile" type="data" label="Transcripts Input File" format="gff" /> </inputs> <outputs> <data format="gff3" name="outputFile" label="[splitTranscript] Output File"/> </outputs> <help> Note that iputs files should be sorted by increasing positions and that expressed referencies should be included in transcripts. Command example: perl splitTranscriptGff.pl -i annotations.gff -j transcripts.gff > TUTag.gff3 </help> </tool>